Instituut voor Theoretische Biologie te Leiden: publikaties 2002
Instituut voor Theoretische Biologie te Leiden

Publikaties 2002


  1. Barends, Sharief, Karl Bjrk, Alexander P. Gultyaev, Maarten H. de Smit, Cornelis W.A. Pleij, Barend Kraal. Functional evidence for D- and T-loop interactions in tmRNA. FEBS Letters 514 (2002): 78-83.
  2. Collin, C.L., P.S. Pennings, C. Rueffler, A. Widmer, J.A. Shykoff. Natural enemies and sex: how seed predators and pathogens contribute to sex-differential reproductive success in a gynodioecious plant. Oecologia 131 (2002): 94-102.
  3. Duffels, J. P. and H. Turner. Cladistic analysis and biogeography of the cicadas of the Indo-Pacific subtribe Cosmopsaltriina (Hemiptera: Cicadoidea: Cicadidae). Systematic Entomology 27 (2002): 135-161.
  4. Galis, F. and B. Sinervo. Divergence and convergence in early embryonic stages of metazoans. Contributions to Zoology 71 (1/3) (2002): 101-113.
  5. Galis, F. and T.J.M. van Dooren. The rise of the Aristotelean worms. TRENDS in Ecology and Evolution 17 (2002): 11.
  6. Galis, F. and T.J.M. van Dooren. Is it dangerous to grow fast and become large? TRENDS in Ecology and Evolution 17 (12) (2002): 547.
  7. Galis, F., J.J.M. van Alphen and J.A.J. Metz. Pseudo-homeosis in avian feet. TRENDS in Ecology and Evolution 17 (6) (2002): 256.
  8. Galis, F., J.J.M. van Alphen and J.A.J. Metz. Digit Reduction: Via Repatterning or Developmental Arrest? Evolution and Development 4: (2002): 249-251.
  9. Galis, F., B. Sinervo and J.A.J. Metz. The Digital Arch Model Reconsidered. TRENDS in Ecology and Evolution 17 (9) (2002): 405.
  10. Galis, F., T. van Dooren and J.A.J. Metz. Conservation of the segmented germband stage: modularity and robustness or pleiotropy and stabilizing selection? TIG 18 (2002): 504-509
  11. Geritz, S.A.H., M. Gyllenberg, F.J.A. Jacobs and K. Parvinen: Invasion Dynamics and Attractor Inheritance. Journal of Mathematical Biology 44 (2002): 548-560.
  12. Gultyaev, A.P., F.H.D. van Batenburg and C.W.A. Pleij. Selective Pressures on RNA Hairpins In Vivo and In Vitro. J Mol Evol 54 (2002): 1-8.
  13. Haccou, P. and O. Glaizot. The ESS in an Asymmetric Generalized War of Attrition with Mistakes in Role Perception. Journal of Theoretical Biology 214 (2002): 329-349.
  14. Hemerik, L., N. van der Hoeven and J.J.M. van Alphen. Egg Distributions and the Information a Solitary Parasitoid has and uses for Its Oviposition Decisions. Acta Biotheoretica 50 (2002): 167-188.
  15. 't Hoen, Peter A.C., Ruud Out, Jan N.M. Commandeur, Nico P.E. Vermeulen, F.H.D. (Eke) van Batenburg, Muthiah Manoharan, Theo J.C. van Berkel, Erik A.L. Biessen and Martin K. Bijsterbosch. Selection of antisense oligodeoxynucleotides against glutathione S-transferase Mu. RNA 8 (2002): 1572-1583.
  16. Hoeven, N. van der and L. Hemerik. Significance tables for the exact variance test for the Poisson distribution with alternative underdispersion. Environmental and Ecological Statistics 9 (2002): 201-213.
  17. Hoeven, N. van der, B.J. Kater and J.F. Pieters. Statistical tests and power analysis for three in-vivo bioassays to determine the quality of marine sediments. Environmetrics 13 (2002): 281-293.
  18. Jong, T. J. de, F.H.D. (Eke) van Batenburg and J. van Dijk. Seed sex ratio in dioecious plants depends on relative dispersal of pollen and seeds: an example using a chessboard simulation model. J. Evol. Biol. 15 (2002): 373-379.
  19. Lemmens, P. en T.A.C. Reydon. Het genoom in context. Algemeen Nederlands Tijdschrift voor Wijsbegeerte 94 (2002): 230-232.
  20. Lipzig, Rosalinde van, Alexander P. Gultyaev, Cornelis W.A. Pleij, Marc van Montagu, Marc Cornelissen and Frank Meulewaeter. The 5' and 3' extremities of the satellite tobacco necrosis virus translational enhancer domain contribute differentially to stimulation of translation. RNA (2002) 8: 229-236.
  21. Nagel, J. H. A., A. P. Gultyaev, K. J. Öistämö, K. Gerdes and C.W. A. Pleij. A pH-jump approach for investigating secondary structure refolding kinetics in RNA. Nucleic Acids Research 30 (13) (2002): e63 (8pp).
  22. Smit, M.H. de, A.P. Gultyaev, M. Hilge, H.H.J. Bink, S. Barends, B. Kraai and C.W.A. Pleij. Structural variation and functional importance of a D-loop-T-loop interaction in valine-accepting tRNA-like structures of plant viral RNAs. Nucleic Acids Research 30 (19) (2002): 4232-4240.
  23. Veller, M.G.P. van, D.J. Kornet and M. Zandee. A posteriori and a priori methodologies for testing hypotheses of causal processes in vicariance biogeography [.pdf format; 68 Kb] Cladistics 18 (2002): 207-217.
  24. Veller, M.G.P. van, and M. Zandee. 2002. Mise en evidence de methodologies vicariantes en biogeographie de la vicariance [.pdf format; 224 Kb - in English] Biosystema 20, Systematique et biogeographie: 7-14. 207-217.

Books and book chapters

  1. Beltman J.B., J.A.M. Borghans and R.J. De Boer. Major Histocompatibility Complex: Polymorphism from coevolution. pp. 185-197. In: Dieckmann, U., J.A.J. Metz, M.W. Sabelis and K. Sigmund (Eds) (2002). Adaptive Dynamics of Infectious Diseases: In Pursuit of Virulence Management. Cambridge UP.
  2. Dieckmann, U., J.A.J. Metz, M.W. Sabelis and K. Sigmund eds. (2002). Adaptive Dynamics of Infectious Diseases: In Pursuit of Virulence Management. Cambridge UP 515 pp. Hardback GBP 50. ISBN 0521781655.
  3. Krackow, S., E. Meelis and I.C.W. Hardy (2002). Analysis of sex ratio variances and sequences of sex allocation. pp. 112-131. In: Hardy, I.C.W. Ed. Sex Ratios. Concepts and Research Methods. Cambridge University Press.424 pp.
  4. Sabelis, Maurice W. and Johan A.J. Metz. Taking Stock: Relating Theory to Experiment. pp. 379-398. In: Dieckmann, U., J.A.J. Metz, M.W. Sabelis and K. Sigmund eds. (2002). Adaptive Dynamics of Infectious Diseases: In Pursuit of Virulence Management. Cambridge UP.

Conference proceedings

  1. Turner, H. Using the results of Bayesian inference in biogeography. Symposium Plant Species-Level Systematics, Leiden. Abstracts (2002): 55.


  1. Batenburg, Eke van. Better Structured Control in J. APL Quote Quad 32(1) (2001 (published in 2002)): 18-25.
  2. Batenburg, Eke van. New Primitive execute for APL-Style Structured Control. APL Quote Quad 32(2) (2001 (published in 2002)): 5-17.
  3. Batenburg, Eke van. Book Review: APLX the Awakening of the Sleeping Beauty (2002). Vector 19 (1) (2002): 49-65.
  4. Batenburg, F.H.D. (Eke) van, Jasper van Dijk and Dirk-Jan van Leeuwen. A Gui-quad for Graphical User Interaction. Vector 19 (2) (2002): 76-88.
  5. Galis, F. and J.A.J. Metz. Waarom zoogdieren zeven nekwervels hebben. Natuur en Techniek 70(3) (2002): 45.
  6. Reydon, T.A.C. Book review of Emergence: The Connected Lives of Ants, Brains, Cities, and Software by Steven Johnson. History and Philosophy of the Life Sciences 24 (2002): 113-115.
  7. Reydon, T.A.C. De kruisbestuiving van biologie en filosofie: over soorten en natural kinds. In: Bartsch, R., Beentjes, R., De Bruin, B. en Van der Leeuw, K. (eds.). Filosofie & Empirie: Handelingen van de 24e Nederlands-Vlaamse Filosofiedag, Amsterdam: Faculteit der Geesteswetenschappen, Universiteit van Amsterdam. (2002): 177-18.
  8. Reydon, T.A.C. Book review of Species Concepts and Phylogenetic Theory: A Debate by Quentin D. Wheeler and Rudolf Meier. Acta Biotheoretica 50 (2002): 137-140.
  9. Reydon, T.A.C. Editorial: Looking back, looking ahead, Acta Biotheoretica 50 (2002) : i-ii.
  10. Wouters, Arno. Verklaren zonder oorzaken te geven. Algemeen Nederlands Tijdschrift voor Wijsbegeerte 94(3) (2002): 178-193.


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