Instituut voor Theoretische Biologie te Leiden: publikaties 2000
Instituut voor Theoretische Biologie te Leiden

Publikaties 2000


  1. Armbruster, G.F.J., C.H.M. van Moorsel and E. Gittenberger. Conserved sequence patterns in the non-coding ribosomal ITS-1 of distantly related snail taxa. Journal of Molluscan Studies 66 (2000): 570-573.
  2. Bank, R.A. and E. Gittenberger. On the polytypic and problematic Clausilia dubia: notes on its nomenclature and systematics (Gastropoda, Pulmonata, Clausiliidae). Basteria 64 (2000): 15-27.
  3. Bank, R.A., G. Falkner and E. Gittenberger. Nomenclatural notes on a Ceciloides species of the Italian and Swiss Alps (Gastropoda, Pulmonata, Ferussaciidae). Basteria 64 (4-6) (2000): 99-104.
  4. Batenburg, FHD, AP Gultyaev, CWA Pleij, J Ng and J Oliehoek. PseudoBase: a database with RNA pseudoknots. Nucleic Acids Research 28(1) (2000): 201-204.
  5. Bos R van den. General Organizational Principles of the Brain as Key to the Study of Animal Consciousness. Psyche 6(5) (2000)
  6. Chapman, L. J., F. Galis and J, Shinn. Phenotypic plasticity and the possible role of genetic assimilation: Hypoxia-induced trade-offs in the morphological traits of an African cichlid. Ecology Letters (2000) 3: 387-393.
  7. Dijk, H.F.G. van, L. Brussaard, A. Stein, F. Baerselman, H. de Heer , T.C.M. Brock, E. van Donk, L.E.M. Vet, M.A. van der Gaag, C.A.M. van Gestel, N. van der Hoeven, F.M.W. de Jong, A.M.A. van der Linden, P.C.M. van Noort, P.A. Oomen and P.J.M. van Vliet. Field Research for the Authorisation of Pesticides. Ecotoxicology 9 (2000): 377-381.
  8. Dooren, T.J.M. van, The evolutionary dynamics of direct phenotypic overdominance: emergence possible, loss probable. Evolution 54 (2000): 1899-1914.
  9. Galis, F. and J.J.M. van Alphen. How fast do Crossbills speciate? On assortative mating and vocalizations. Trends Ecol. Evol. (2000) 15: 357.
  10. Gassmann, D.Revision of the Papuan Idiocnemis bidentata - species-group (Odonata: Platycnemididae). Zoologische Mededelingen 74(23) (2000): 375-402.
  11. Gittenberger, A., J. Goed and E. Gittenberger. Epitonium (Gastropoda: Epitoniidae) associated with mushroom corals (Scleractinia: Fungiidae) from Sulawesi, Indonesia, with the description of four new species. The Nautilus 114(1) (2000): 1-13.
  12. Gittenberger, E. Alternative pathways in the development of the clausilial apparatus in shells of Albinaria and Isabellaria (Gastropoda, Pulmonata, Clausiliidae). Basteria 64 (1-2) (2000): 29-32.
  13. Gittenberger, E. Serrulininae in Greece, there may be more (Gastropoda, Pulmonata, Clausiliidae). Basteria 64 (4-6) (2000): 81-87.
  14. Gittenberger, E. Triple homoplasy in the clausilial apparatus: a columellar knob in Alopīnae (Gastropoda: Pulmonata: Clausiliidae). J. Moll. Stud. 66 (2000): 129-130
  15. Gittenberger, E. Case 2926. Trichia Hartmann, 1840 (Mollusca, Gastropoda): proposed conservation; and TRICHIINAE Lozek, 1956 (Mollusca): proposed emendation of spelling to TRICHIAINAE, so removing the homonymy with TRICHIIDAE Fleming, 1821 (Insecta, Coleoptera). Bulletin of Zoological Nomenclature 57(1) (March 2000): 17-23.
  16. Gittenberger, E., J.Goud, W.J.M. Maassen, H.P.M.G. Menkhorst, Th.E.J. Ripken, A.J. de Winter and R.A. Bank. Comment on the proposed conservation of Trichia Hartmann, 1840 (Mollusca, Gastropoda) and proposed emendation of spelling of Trichiinae Lozek, 1956 (Mollusca) to Trichiainae, so removing the homonymy with Trichiidae Fleming, 1821 (Insecta, Coleoptera). Bulletin of Zoological Nomenclature 57 (3) (2000): 166-167.
  17. Gultyaev A.P., Franch T. & Gerdes K.Coupled covariations reveal dynamic RNA interaction patterns. RNA 6 (2000): 1483-1491.
  18. Moorsel, C.H.M. van, J. van Nes and H.-J. Megens. Letters to the Editor. A Quick, Simple, and Inexpensive Mollusc DNA Extraction Protocal for PCR-Based Techniques. Malacologia 42(1-2) (2000): 203-206.
  19. Moorsel, C.H.M. van, E.G.M. Dijkstra and E. Gittenberger. Molecular Evidence for Repetitive Parallel Evolution of Shell Structure in Clausiliidae (Gastropoda, Pulmonata). Molecular Phylogenetics and Evolution 17 (2) (2000): 200-208.
  20. Pasternak A.O., Gultyaev A.P., Spaan W.J.M. & Snijder E.J. Genetic manipulation of arterivirus alternative mRNA leader-body junction sites reveals tight regulation of structural protein expression. J. Virol. 74 (2000): 11642-11653.
  21. Piel, W.H. and Karen J. Nutt. One Species or Several? Discordant Patterns of Geographic Variation between Allozymes and mtDNA Sequences among Spiders in the Genus Metepeira (Araneae: Araneidae). Molecular Phylogenetics and Evolution 15 (3) (2000): 414-418.
  22. Veller, M.G.P. van, D.J. Kornet, and M. Zandee. Methods in vicariance biogeography: assessment of the implementations of assumptions zero, 1 and 2. [.pdf format; 180 Kb] Cladistics 16 (3) (2000): 319-345.
  23. Vos, P., E. Meelis and W.J. ter Keurs.. A framework for the design of ecological monitoring programs as a tool for environmental and nature management. Environmental Monitoring and Assessment 61 (3) (2000): 317-344.

Books and book chapters

  1. Dieckmann, U., R. Law, J.A.J. Metz (Eds). The Geometry of Ecological Interactions. Simplifying Spatial Complexity. Cambridge University Press. (2000). pp. xiv + 564.
  2. Gerdes K., Ayora S., Canosa I., Ceglowski P., Diaz-Orejas R., Franch T., Gultyaev A.P., Bugge Jensen R., Kobayashi I., MacPherson C., Summers D., Thomas C.M. & Zielenkewicz U. (2000). Plasmid maintenance systems. In: The Horizontal Gene Pool: Bacterial Plasmids and Gene Spread (Thomas C.M., Ed.), Harwood Academic Publishers, pp. 49-85.
  3. Metz, J.A.J., D. Mollison and F. van den Bosch. The Dynamics of Invasion Waves. pp. 482-512. In: U. Dieckmann, R. Law, J.A.J. Metz (Eds). The Geometry of Ecological Interactions. Simplifying Spatial Complexity. Cambridge University Press. (2000). 586pp.


  1. M.G.P. van Veller. Unveiling vicariant methodologies in vicariance biogeography. Not anything goes. Leiden University, 125 pp (2000). ISBN 90-9014087-5 Promotor: Prof.dr. D.J. Kornet. Copromotor: Dr. M. Zandee.

Conference proceedings

  1. Gultyaev, A.P., F.H.D. van Batenburg and C.W.A. Pleij. Prediction of RNA Tertiary Structure Elements in the Simulation of Secondary Structure Formation. Nucleic Acids 2000. Programme of the annual meeting of the CW-NWO Nucleic Acids Study Group, in collaboration with the KNCV Section for Bio-informatics. Leeuwenhorst Congress Centre, Noordwijkerhout, 15-16 May 2000. Poster.


  1. Kisdi, E., F.J.A. Jacobs and Stefan A.H. Geritz. Red Queen Evolution by Cycles of Evolutionary Branching and Extinction. IIASA Interim Report IR-00-030. IIASA Studies in Adaptive Dynamics 43 (2000): 1-25.
  2. Vos, P. E. Meelis en W.J. ter Keurs. Second Opinion: Effecten van treingeluid op weidevogels. Een kritische analyse van het onderzoek van Alterra naar de invloed van treingeluid op de dichtheden van weidevogels. MiBi rapport 18 December 2000.


  1. Aartsen, J.J. van, E. Gittenberger and J. Goud. Pyramidellidae (Mollusca, Gastropoda, Heterobranchia) collected during the Dutch CANCAP and MAURITANIA expeditions in the south-eastern part of the North Atlantic Ocean (part 2). CANCAP-project. Contributions No. 123: 1-50.
  2. Batenburg, FHD van and D.W. Visser. Powerful and Easy Graphics: Making Plots in J. APL Quote Quad 30 (3) (2000): 31-40.
  3. Dijk, H.F.G. van, L. Brussaard, F. Baerselman, T.C.M. Brock, E. van Donk, M.A. van der Gaag, C.A.M. van Gestel, H. de Heer, N. van der Hoeven, F.M.W. de Jong, A.M.A. van der Linden, P.C.M. van Noort, P.A. Oomen, A. Stein, L.E.M. Vet and P.J.M. van Vliet. Veldonderzoek voor de toelating van gewasbeschermingsmiddelen. Mededelingenblad van de Koninklijke Nederlandse Planteziektekundige Vereniging 31 (2000): 136-139.
  4. Gittenberger, E. Review G.R. McGhee, Jr., 1999. Theoretical morphology ­ the concept and its applications: i-xii 1-316, text-figs. Perspectives in Paleobioology and Early History. (David J. Bottjer & Richard K. Bambach, Eds). Crustaceana 73 (1) (2000): 115-116.
  5. Gittenberger, E. Opmerkingen over biodiversiteit. NatuurMUSEUMJannink 3+4 (aug. 2000): 3-4.


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